YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDDR_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFWSILRQR CWGLVLVVAG VCVITFIISH LIPGDPARLL AGDRASDAIV ENIRQQLGLD  60
   61 QPLYVQFYRY VSDLFHGDLG TSIRTGRPVL EELRIFFPAT LELAFGALLL ALLIGIPLGI 120
  121 LSAVWRNRWL DHLVRIMAIT GISTPAFWLG LGVIVLFYGH LQILPGGGRL DDWLDPPTHV 180
  181 TGFYLLDALL EGNGEVFFNA LQHLILPALT LAFVHLGIVA RQIRSAMLEQ LSEDYIRTAR 240
  241 ASGLPGWYIV LCYALPNALI PSITVLGLAL GDLLYGAVLT ETVFAWPGMG AWVVTSIQAL 300
  301 DFPAVMGFAV VVSFAYVLVN LVVDLLYLWI DPRIGRGGGE

Type	Start	End	Confidence
Cytoplasmic	1	10	0.97
Transmembrane Helix	11	32	0.95
Non-Cytoplasmic	33	102	0.98
Transmembrane Helix	103	125	0.92
Cytoplasmic	126	135	0.88
Transmembrane Helix	136	158	0.87
Non-Cytoplasmic	159	199	0.92
Transmembrane Helix	200	219	0.92
Cytoplasmic	220	245	0.86
Transmembrane Helix	246	268	0.84
Non-Cytoplasmic	269	272	0.66
Transmembrane Helix	273	295	0.59
Cytoplasmic	296	303	0.45
Transmembrane Helix	304	328	0.85
Non-Cytoplasmic	329	340	0.58