YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCJS_ECOLI
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSAMTSSPL RVAIIGAGQV ADKVHASYYC TRNDLELVAV CDSRLSQAQA LAEKYGNASV  60
   61 WDDPQAMLLA VKPDVVSVCS PNRFHYEHTL MALEAGCHVM CEKPPAMTPE QAREMCDTAR 120
  121 KLGKVLAYDF HHRFALDTQQ LREQVTNGVL GEIYVTTARA LRRCGVPGWG VFTNKELQGG 180
  181 GPLIDIGIHM LDAAMYVLGF PAVKSVNAHS FQKIGTQKSC GQFGEWDPAT YSVEDSLFGT 240
  241 IEFHNGGILW LETSFALNIR EQSIMNVSFC GDKAGATLFP AHIYTDNNGE LMTLMQREIA 300
  301 DDNRHLRSME AFINHVQGKP VMIADAEQGY IIQQLVAALY QSAETGTRVE L

Type	Start	End	Confidence
Signal Peptide	1	26	0.60
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	351	0.99