YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCJO_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRLFSGRSD MPFALLLLAP SLLLLGGLVA WPMVSNIEIS FLRLPLNPNI ESTFVGVSNY  60
   61 VRILSDPGFW HSLWMTVWYT ALVVAGSTVL GLAVAMFFNR EFRLRKTARS LVILSYVTPS 120
  121 ISLVFAWKYM FNNGYGIVNY LGVDLLHLYE QAPLWFDNPG SSFVLVVLFA IWRYFPYAFI 180
  181 SFLAILQTID KSLYEAAEMD GANAWQRFRI VTLPAIMPVL ATVVTLRTIW MFYMFADVYL 240
  241 LTTKVDILGV YLYKTAFAFN DLGKAAAISV VLFIIIFAVI LLTRKRVNLN GNK

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	34	0.91
Non-Cytoplasmic	35	76	0.96
Transmembrane Helix	77	98	0.96
Cytoplasmic	99	109	0.87
Transmembrane Helix	110	131	0.90
Non-Cytoplasmic	132	162	0.92
Transmembrane Helix	163	186	0.78
Cytoplasmic	187	209	0.88
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	261	0.95
Transmembrane Helix	262	283	0.90
Cytoplasmic	284	293	0.93