YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCJF_SHIFL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPLKPRID FDGPLEVEQN PKFRAQQTFD ENQAQNFAPA TLDEAQEEEG QVEAVMDAAL  60
   61 RPKRSLWRKM VMGGLALFGA SVVGQGIQWT MNAWQTQDWV ALGGCAAGAL IIGAGVGSVV 120
  121 TEWRRLWRLR QRAHERDEAR DLLHSHGTGK GRAFCEKLAQ QAGIDQSHPA LQRWYASIHE 180
  181 TQNDREVVSL YAHLVQPVLD AQARREISRS AAESTLMIAV SPLALVDMAF IAWRNLRLIN 240
  241 RIATLYGIEL GYYSRLRLFK LVLLNIAFAG ASELVREVGM DWMSQDLAAR LSTRAAQGIG 300
  301 AGLLTVRLGI KAMELCRPLP WIDDDKPRLG DFRRQLIGQV KETLQKGKTP SEK

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	89	0.93
Non-Cytoplasmic	90	98	0.88
Transmembrane Helix	99	121	0.94
Cytoplasmic	122	213	0.98
Transmembrane Helix	214	233	0.82
Non-Cytoplasmic	234	353	0.57