YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCDT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDYLRISS TVLVSLLFGL ALVLVNSWFN QPGVEEVVPR STYLMVMIAL FFIDTVAFIF  60
   61 MQLYFIYDRR QFSNCVLSLA FLSCLIYFVI TVIIIQQIIE ERLTSSVVQN DIAIYYLFRQ 120
  121 MSLCILIFLA LVNKVSENTK QRNLFSKKMT LCISLFFVFG GPIVAHILSS HYESYNLHIA 180
  181 ELTNENGQVV WKASYVTIMI FMWLTLLSVN LYFNGLRYDI WNGVTVIAFC AVLYNISLLF 240
  241 MSRYSVSTWY ISRTIEVVSK LTVMVIFMCH IFSALRVTKN IAHRDPLTNI FNRNYFFNEL 300
  301 TVQSASAQKT PYCVMIMDID HFKKVNDTWG HPVGDQVIKT VVNIIGKSIR PDDLLARVGG 360
  361 EEFGVLLTDI DTERAKALAE RIRENVERLT GDNPEYAIPQ KVTISIGAVV TQENALNPNE 420
  421 IYRLADNALY EAKETGRNKV VVRDVVNFCE SP

Type	Start	End	Confidence
Cytoplasmic	1	7	0.92
Transmembrane Helix	8	29	0.89
Non-Cytoplasmic	30	42	0.91
Transmembrane Helix	43	66	0.90
Cytoplasmic	67	74	0.88
Transmembrane Helix	75	95	0.95
Non-Cytoplasmic	96	111	0.88
Transmembrane Helix	112	133	0.89
Cytoplasmic	134	148	0.88
Transmembrane Helix	149	169	0.92
Non-Cytoplasmic	170	192	0.89
Transmembrane Helix	193	213	0.91
Cytoplasmic	214	219	0.85
Transmembrane Helix	220	241	0.90
Non-Cytoplasmic	242	256	0.78
Transmembrane Helix	257	274	0.84
Cytoplasmic	275	452	0.88