YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y1246_HAEIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVVFTMKKA HSPLFPIFTF VLINLIILSL SRLGLAVWQS ERVSAVDGWL QLFLQGVRMD  60
   61 VVALCYLFGV PALLTTLFHS SKVWVKILRL WLTFGSVFII FMEIATPAFI ETYDYRPNRL 120
  121 FIEYLIYPKE VFSMLAEGHL SAVIFSLVFT ILAAVIYWKI SGWAVKNLRS MSWKLRPVIA 180
  181 LLVIVVSFLG ARSSFQHRGI NPAMVAFSSD ALVNSLVLNS GYSVIYAAQQ FKDEEKSSEM 240
  241 YGKMDADEMF RIVKASRGRP ESDYISDKYP TLTKNVATYQ GKPKNIVILL QESLGAQFIG 300
  301 TLGGKPLSPN VDQLAKEGWL FENLYATGTR SVRGIEATTA GFTPTPARAV VKLNNAQSGF 360
  361 FTIADLLHKQ GYNTSFIYGG EKHFDNMASF FYGNGFKDIW DQQDYQNPKF TGTWGVSDED 420
  421 LFDKANETFT KLQNEGKPFF SLVFSSSNHD PFEYPDGKIE LYEQPKATRN NAAKYADYAL 480
  481 GHFFKMAKQS NYWKDTIFLI IADHDSRVGG ASLVPIKHFH IPALILGDGI TPRRDSRLVS 540
  541 QIDMPTTLLS LAGVSGNYPM IGFDLTQDVN PDRAFMQYDQ TQAMMKGNND VVIQMPNKAA 600
  601 QGYHYDKSTE TLTPKDVPDA MKKEALAHAL LGSYLYKNRL YSSGENK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.92
Transmembrane Helix	14	36	0.89
Non-Cytoplasmic	37	56	0.92
Transmembrane Helix	57	78	0.91
Cytoplasmic	79	87	0.85
Transmembrane Helix	88	110	0.90
Non-Cytoplasmic	111	139	0.92
Transmembrane Helix	140	160	0.92
Cytoplasmic	161	172	0.90
Transmembrane Helix	173	191	0.94
Non-Cytoplasmic	192	647	0.95