YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBHM_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESYSQNSNK LDFQHEARIL NGIWLITALG LVATAGLAWG AKYIEITATK YDSPPMYVAI  60
   61 GLLLLCMYGL SKDINKINAA IAGVIYLFLL SLVAIVVASL VPVYAIIIVF STAGAMFLIS 120
  121 MLAGLLFNVD PGSHRFIIMM TLTGLALVII VNAALMSERP IWIISCLMIV LWSGIISHGR 180
  181 NKLLELAGKC HSEELWSPVR CAFTGALTLY YYFIGFFGIL AAIAITLVWQ RHTRFFH

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	52	0.83
Transmembrane Helix	53	71	0.91
Cytoplasmic	72	78	0.81
Transmembrane Helix	79	100	0.90
Non-Cytoplasmic	101	105	0.66
Transmembrane Helix	106	127	0.92
Cytoplasmic	128	135	0.77
Transmembrane Helix	136	155	0.95
Non-Cytoplasmic	156	160	0.76
Transmembrane Helix	161	179	0.90
Cytoplasmic	180	207	0.76
Transmembrane Helix	208	229	0.91
Non-Cytoplasmic	230	237	0.81