YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YBAL_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.81
Transmembrane Helix	7	25	0.96
Cytoplasmic	26	32	0.82
Transmembrane Helix	33	52	0.92
Non-Cytoplasmic	53	59	0.79
Transmembrane Helix	60	78	0.95
Cytoplasmic	79	85	0.87
Transmembrane Helix	86	108	0.89
Non-Cytoplasmic	109	113	0.69
Transmembrane Helix	114	136	0.89
Cytoplasmic	137	148	0.97
Transmembrane Helix	149	172	0.89
Non-Cytoplasmic	173	184	0.82
Transmembrane Helix	185	207	0.85
Cytoplasmic	208	225	0.78
Transmembrane Helix	226	243	0.92
Non-Cytoplasmic	244	247	0.63
Transmembrane Helix	248	266	0.77
Cytoplasmic	267	279	0.61
Transmembrane Helix	280	298	0.84
Non-Cytoplasmic	299	303	0.73
Transmembrane Helix	304	327	0.87
Cytoplasmic	328	334	0.83
Transmembrane Helix	335	358	0.87
Non-Cytoplasmic	359	367	0.69
Transmembrane Helix	368	387	0.92
Cytoplasmic	388	558	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHATPLITT IVGGLVLAFI LGMLANKLRI SPLVGYLLAG VLAGPFTPGF VADTKLAPEL  60
   61 AELGVILLMF GVGLHFSLKD LMAVKAIAIP GAIAQIAVAT LLGMALSAVL GWSLMTGIVF 120
  121 GLCLSTASTV VLLRALEERQ LIDSQRGQIA IGWLIVEDLV MVLTLVLLPA VAGMMEQGDV 180
  181 GFATLAVDMG ITIGKVIAFI AIMMLVGRRL VPWIMARSAA TGSRELFTLS VLALALGVAF 240
  241 GAVELFDVSF ALGAFFAGMV LNESELSHRA AHDTLPLRDA FAVLFFVSVG MLFDPLILIQ 300
  301 QPLAVLATLA IILFGKSLAA FFLVRLFGHS QRTALTIAAS LAQIGEFAFI LAGLGMALNL 360
  361 LPQAGQNLVL AGAILSIMLN PVLFALLEKY LAKTETLEEQ TLEEAIEEEK QIPVDICNHA 420
  421 LLVGYGRVGS LLGEKLLASD IPLVVIETSR TRVDELRERG VRAVLGNAAN EEIMQLAHLE 480
  481 CAKWLILTIP NGYEAGEIVA SARAKNPDIE IIARAHYDDE VAYITERGAN QVVMGEREIA 540
  541 RTMLELLETP PAGEVVTG