YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YAIP_ECOLI
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTWIFICMS IAMLLWFLST LRRKPSQKKG CIDAIIPAYN EGPCLAQSLD NLLRNPYFCR  60
   61 VICVNDGSTD NTEAVMAEVK RKWGDRFVAV TQKNTGKGGA LMNGLNYATC DQVFLSDADT 120
  121 YVPPDQDGMG YMLAEIERGA DAVGGIPSTA LKGAGLLPHI RATVKLPMIV MKRTLQQLLG 180
  181 GAPFIISGAC GMFRTDVLRK FGFSDRTKVE DLDLTWTLVA NGYRIRQANR CIVYPQECNS 240
  241 PREEWRRWRR WIVGYAVCMR LHKRLLFSRF GIFSIFPMLL VVLYGVGIYL TTWFNEFITT 300
  301 GPHGVVLAMF PLIWVGVVCV IGAFSAWFHR CWLLVPLAPL SVVYVLLAYA IWIIYGLIAF 360
  361 FTGREPQRDK PTRYSALVEA STAYSQPSVT GTEKLSEA

Type	Start	End	Confidence
Signal Peptide	1	22	0.89
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	177	0.92
Transmembrane Helix	178	198	0.80
Cytoplasmic	199	269	0.89
Transmembrane Helix	270	290	0.93
Non-Cytoplasmic	291	304	0.79
Transmembrane Helix	305	328	0.87
Cytoplasmic	329	339	0.60
Transmembrane Helix	340	359	0.90
Non-Cytoplasmic	360	398	0.88