YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3123045, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMYKVRNMRE TEVVISDKTA NPAPLGLLGF GITTILLNLH NAGLFPINSM ILAMGFAYGG  60
   61 IAQILASVME YRKGNTFGTV AFGSYGLFWW SLVLLLVIPN LKFLETSGTA AASADPVAMA 120
  121 SYLFMWGLFT LLMFIATLKL KRGIQVIFIS LAVLFFLLTA GEITGSALIT AVAGYEGIFT 180
  181 GAAAMYVGLA EVINETHGRD ILPT

Type	Start	End	Confidence
Cytoplasmic	1	19	0.95
Transmembrane Helix	20	39	0.93
Non-Cytoplasmic	40	46	0.68
Transmembrane Helix	47	67	0.91
Cytoplasmic	68	76	0.81
Transmembrane Helix	77	98	0.91
Non-Cytoplasmic	99	117	0.83
Transmembrane Helix	118	138	0.90
Cytoplasmic	139	145	0.78
Transmembrane Helix	146	165	0.90
Non-Cytoplasmic	166	170	0.50
Transmembrane Helix	171	190	0.73
Cytoplasmic	191	204	0.65