YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y154_SYNY3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSRFKSAK SAMRKLKTEQ RKFGDRVSQH TSPRVNRWFK WMAPGLFVKR WMVISAVGLT  60
   61 LMFLGLAIWV KLTPIFRITE FVSDTLGFLT NLLPNYVSGP LILALGLFFV FWGQSRTVGS 120
  121 ISEVLQPDND QELVDVLLAH RRLNKGAKIV VVGGGTGLST LLRGLKHYSA NITAIVTVAD 180
  181 DGGSSGRLRR EMGMLPPGDI RNCIGALADE EKLLTELFQY RFKAGDGLSG HSFGNLFLTA 240
  241 MAEITGDLEM AAIACSKVLA VRGKVLPATL DDVKLWAEME DGRYVEGESN IPEAQGRIRR 300
  301 IGCLPESPKA LPAVLKAIKA ADYIIIGPGS LYTSILPNLL IPEIQTAIAK AKVPRIYICN 360
  361 VMTQPGETDN YTVSDHLTAI DQVSSARLYD AVLVQRNPPS APVLKKYAAE NSHPVYLDRQ 420
  421 AVIEKGCRIV LANVMQEDEK SHQVRHDPQR LARVLMRWYG GQ

Type	Start	End	Confidence
Cytoplasmic	1	46	0.83
Transmembrane Helix	47	70	0.89
Non-Cytoplasmic	71	91	0.76
Transmembrane Helix	92	113	0.89
Cytoplasmic	114	462	0.54