YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y108_SYNY3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	62	0.94
Non-Cytoplasmic	63	89	0.91
Transmembrane Helix	90	110	0.92
Cytoplasmic	111	127	0.83
Transmembrane Helix	128	149	0.89
Non-Cytoplasmic	150	179	0.89
Transmembrane Helix	180	202	0.90
Cytoplasmic	203	210	0.84
Transmembrane Helix	211	231	0.93
Non-Cytoplasmic	232	247	0.87
Transmembrane Helix	248	268	0.91
Cytoplasmic	269	280	0.85
Transmembrane Helix	281	301	0.91
Non-Cytoplasmic	302	314	0.82
Transmembrane Helix	315	338	0.89
Cytoplasmic	339	345	0.89
Transmembrane Helix	346	365	0.92
Non-Cytoplasmic	366	371	0.62
Transmembrane Helix	372	390	0.94
Cytoplasmic	391	398	0.84
Transmembrane Helix	399	419	0.89
Non-Cytoplasmic	420	433	0.86
Transmembrane Helix	434	458	0.91
Cytoplasmic	459	507	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSILSKLN VGERSPVNRT HSSRTEAEKS SLFRFVRRKI NSPWLACVPL TALIVAIWNA  60
   61 AAIAQDTEIV NITVETVNEN VATLQGTLNA IWILIAAILV IFMNAGFGML ETGLCRQKNA 120
  121 VNILTKNLIV FALATIAYWA IGFSLMFGSS GNPFVGFGGF FLSGDHTNYG LSPFPEGLPV 180
  181 AVFFLFQVAF SATAATIVSG AVAERIKFNE FLIFSVLLVG IAYPITGHWV WDAGGWLYTM 240
  241 GFMDFAGSTV VHSVGGWAAL AGAFLLGPRL GKFVDGRPGA IPGHNMGFAM LGCLILWIGW 300
  301 FGFNPGSQLA ADQACAYIAV TTNLAASAGG LTATFTSWLK DGKPDLTMVI NGVLAGLVGI 360
  361 TAGCAGVSYW GSVIIGGIAG ILVVYSVAFF DKIKIDDPVG AISVHLVNGV WGTLAVGFFN 420
  421 MEKGLFYGGG INQLIIQIVG ILAIGAFTAI FSFVVWAILK QTMGIRVSGE EEMIGLDIGE 480
  481 HGMEAYTGFV KETDSFGSAV SGATVPE