YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y087_METJA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.96
Transmembrane Helix	15	35	0.94
Non-Cytoplasmic	36	68	0.93
Transmembrane Helix	69	90	0.94
Cytoplasmic	91	99	0.85
Transmembrane Helix	100	122	0.88
Non-Cytoplasmic	123	133	0.89
Transmembrane Helix	134	155	0.93
Cytoplasmic	156	164	0.85
Transmembrane Helix	165	187	0.92
Non-Cytoplasmic	188	205	0.94
Transmembrane Helix	206	227	0.89
Cytoplasmic	228	257	0.88
Transmembrane Helix	258	281	0.84
Non-Cytoplasmic	282	294	0.64
Transmembrane Helix	295	314	0.86
Cytoplasmic	315	321	0.61
Transmembrane Helix	322	343	0.91
Non-Cytoplasmic	344	349	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPQKYKLY TKKKIIFGII LLITLFLSSI YALCVGDYKL TVNQVVNALM GYGKDDINLV  60
   61 IWNIRLPRIF AAIISGMSLA VAGAVMQCIL RNPLASPFTM GISHGAMFGA CFAIIMFGFG 120
  121 GAESTGRIFI NNPYMITIFA FLGALIGVVV ILLLAKLRGL TPEAMILAGV AMSSLFTAGT 180
  181 MLIQYFADDL QLAAMVYWTF GDLGRAIWTE IYIMAAVMIP SLIYFMYKRW DYNALEAGEE 240
  241 TAKSLGVNTE RTRLIGMLVA SLLTSVNVAF LGIIGFVGLI CPHIVRICIG GDYRFLIPIS 300
  301 ALFGAVLLLI ADTFARTIIA PIVLPVGILT SFLGAPMFLY LLLKMYKRV