YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPP2_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.84
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	405	0.98
Transmembrane Helix	406	430	0.90
Cytoplasmic	431	447	0.93
Transmembrane Helix	448	468	0.90
Non-Cytoplasmic	469	528	0.86
Transmembrane Helix	529	546	0.43
Cytoplasmic	547	553	0.52
Transmembrane Helix	554	577	0.86
Non-Cytoplasmic	578	585	0.54
Transmembrane Helix	586	611	0.81
Cytoplasmic	612	619	0.53
Transmembrane Helix	620	641	0.75
Non-Cytoplasmic	642	650	0.60
Transmembrane Helix	651	671	0.93
Cytoplasmic	672	755	0.70
Transmembrane Helix	756	775	0.69
Non-Cytoplasmic	776	784	0.56
Transmembrane Helix	785	808	0.86
Cytoplasmic	809	854	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLFRSETM CLAQLFLQSG TAYECLSVLG EKGLVEFRDL NQNVSSFQRK FVGEVKRCEE  60
   61 LERILAYLVQ EINRADIPLP EGDTSPPAPP LKQVLEMQEQ LQKLEVELRE VTKNKEKLRK 120
  121 NLLELIEYTH MLRVTKTFVK RNVEFEPTYE EFPPLENESL LDYSCMQRLG AKLGFVSGLI 180
  181 NQGKVEAFEK MLWRVCKGYT IVTYAELDEP LEDPETGEVI KWYVFLISFW GEQIGHKVKK 240
  241 ICDCYHCHVY PYPNTAEERR EIQEGLNTRI QDLYTVLHKT EDYLRQVLCK AAESVYSRVI 300
  301 QVKKMKAIYH MLNMCSFDVT NKCLIAEVWC PEADLHELRR ALEEGSRESG GTIPSFMNTI 360
  361 PTKETPPTLI RTNKFTEGFQ NIVDAYGVGS YQEVNPALFT IITFPFLFAV MFGDFGHGFV 420
  421 MFLFALLLVL NENHPRLNQS QEIMRMFFNG RYILLLMGLF SVYTGLIYND CFSKSVNLFG 480
  481 SRWNVSAMYS SSHSPEEQRK MVLWNDSIVR HHSVLQLDPS VPGVFRGPYP FGIDPIWNLA 540
  541 TNRLTFLNSF KMKMSVILGI THMTFGVILG IFNHLHFRKK FNICLVSIPE LLFMLCIFGY 600
  601 LIFMIIYKWL VYSAETSRTA PSILIEFISM FLFLASDTGG LYPGQEHVQR LLLLITVLSV 660
  661 PVLFLGKPLF LLWLHRGRSC FGVGRSGYTL VRKDSEEEVS LLGGQDIEEG NNQMEDGCRE 720
  721 VTCEEFDFGE ILMTQIIHSI EYCLGCISNT ASYLRLWALS LAHAQLSEVL WAMLMHVGLR 780
  781 VDTAYGVLVL LPVIAFFAVL TIFILLIMEG LSAFLHAIRL HWVEFQNKFY VGAGTKFVPF 840
  841 SFRLLSSKFS DDLA