YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VPE_RICCO
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METHKSLLFF TNYVLFLVFT LSFLPIPGLL ASRLNPFEPG ILMPTEEAEP VQVDDDDQLG  60
   61 TRWAVLVAGS MGFGNYRHQA DVCHAYQLLR KGGLKEENII VFMYDDIAKN ELNPRPGVII 120
  121 NHPQGEDVYA GVPKDYTGEH VTAKNLYAVL LGDKSAVQGG SGKVVDSKPN DRIFLYYSDH 180
  181 GGPGVLGMPN LPYLYAMDFI EVLKKKHAAG GYKKMVIYVE ACESGSIFEG IMPKDVDIYV 240
  241 TTASNAQESS WGTYCPGMEP SPPPEFTTCL GDLYSVAWME DSESHNLKKE TVKQQYSSVK 300
  301 ARTSNYNTYA AGSHVMQYGN QSIKADKLYL FQGFDPASVN FPPNNAHLNA PMEVVNQRDA 360
  361 ELHFMWQLYK RSENGSEKKK EILQQIKDAI KHRSHLDSSM QLIGDLLFGP KKASAILKSV 420
  421 REPGSPLVDD WGCLKSMVRV FETCCGSLTQ YGMKHMRTFA NICNAGVSHT SMEEACNAAC 480
  481 SGHDAGQWHP TNQGYSA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.50
Transmembrane Helix	9	31	0.51
Non-Cytoplasmic	32	497	0.99