YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VP33_APLCA
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHEQALIL EPAGELRFKG PFTDVVTADL KLSNPTDRRI CFKVKTTAPK RYCVRPNSGI  60
   61 LEPKTSIAVA VMLQPFNYDP NEKNKHKFMV QSMYAPDHVV ESQELLWKDA PPESLMDTKL 120
  121 RCVFEMPDGS HQAPASDASR ATDAGAHFSE SALEDPTVAS RKTETQSPKR VGAVGSAGED 180
  181 VKKLQHELKK AQSEITSLKG ENSQLKDEGI RLRKVAMTDT VSPTPLNPSP APAAAVRAFP 240
  241 PVVYVVAAII LGLIIGKFLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	232	0.57
Transmembrane Helix	233	256	0.79
Cytoplasmic	257	260	0.38