YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VMAT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.95
Transmembrane Helix	21	43	0.94
Non-Cytoplasmic	44	134	0.81
Transmembrane Helix	135	153	0.58
Cytoplasmic	154	162	0.61
Transmembrane Helix	163	186	0.85
Non-Cytoplasmic	187	191	0.65
Transmembrane Helix	192	212	0.86
Cytoplasmic	213	221	0.85
Transmembrane Helix	222	243	0.91
Non-Cytoplasmic	244	250	0.78
Transmembrane Helix	251	271	0.94
Cytoplasmic	272	291	0.89
Transmembrane Helix	292	312	0.92
Non-Cytoplasmic	313	330	0.83
Transmembrane Helix	331	351	0.93
Cytoplasmic	352	358	0.80
Transmembrane Helix	359	379	0.94
Non-Cytoplasmic	380	389	0.64
Transmembrane Helix	390	411	0.87
Cytoplasmic	412	418	0.77
Transmembrane Helix	419	438	0.90
Non-Cytoplasmic	439	449	0.66
Transmembrane Helix	450	471	0.93
Cytoplasmic	472	515	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSDLVLLR WLRDSRHSRK LILFIVFLAL LLDNMLLTVV VPIIPSYLYS IKHEKNSTEI  60
   61 QTTRPELVVS TSESIFSYYN NSTVLITGNA TGTLPGGQSH KATSTQHTVA NTTVPSDCPS 120
  121 EDRDLLNENV QVGLLFASKA TVQLLTNPFI GLLTNRIGYP IPMFAGFCIM FISTVMFAFS 180
  181 SSYAFLLIAR SLQGIGSSCS SVAGMGMLAS VYTDDEERGK PMGIALGGLA MGVLVGPPFG 240
  241 SVLYEFVGKT APFLVLAALV LLDGAIQLFV LQPSRVQPES QKGTPLTTLL KDPYILIAAG 300
  301 SICFANMGIA MLEPALPIWM METMCSRKWQ LGVAFLPASI SYLIGTNIFG ILAHKMGRWL 360
  361 CALLGMVIVG ISILCIPFAK NIYGLIAPNF GVGFAIGMVD SSMMPIMGYL VDLRHVSVYG 420
  421 SVYAIADVAF CMGYAIGPSA GGAIAKAIGF PWLMTIIGII DIAFAPLCFF LRSPPAKEEK 480
  481 MAILMDHNCP IKRKMYTQNN VQSYPIGDDE ESESD