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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VIRD4_AGRFC
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.35
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSKTTPQR LAVSIVCSLA AGFCAASLYV TFRHGFNGEA MMTFSVFAFW YETPLYMGHA  60
   61 TPVFYCGLAI VVSTSIVVLL SQLIISFRNH EHHGTARWAG FGEMRHAGYL QRYNRIKGPI 120
  121 FGKTCGPRWF GSYLTNGEQP HSLVVAPTRA GKGVGVVIPT LLTFKGSVIA LDVKGELFEL 180
  181 TSRARKAGGD AVFKFSPLDP ERRTHCYNPV LDIAALPPER QFTETRRLAA NLITAKGKGA 240
  241 EGFIDGARDL FVAGILTCIE RGTPTIGAVY DLFAQPGEKY KLFAHLAEES RNKEAQRIFD 300
  301 NMAGNDTKIL TSYTSVLGDG GLNLWADPLV KAATSRSDFS VYDLRRKRTC VYLCVSPNDL 360
  361 EVVAPLMRLL FQQVVSILQR SLPGKDERHE VLFLLDEFKH LGKLEAIETA ITTIAGYKGR 420
  421 FMFIIQSLSA LTGIYDDAGK QNFLSNTGVQ VFMATADDET PTYISKAIGD YTFKARSTSY 480
  481 SQARMFDHNI QISDQGAPLL RPEQVRLLDD NNEIVLIKGH PPLKLRKVRY YSDRMLRRLF 540
  541 ECQIGALPEP ASLMLSEGVH RDGQDLSQQA AVTEAQGLGD IDSIPNNMEA ATPQNSEMDD 600
  601 EQDSLPTGID VPQGLIESDE VKEDAGGVVP DFGVSAEMAP AMIAQQQLLE QIIALQQRYG 660
  661 PASSHSVK

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