YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIRBA_AGRFC
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDDNQQSAH DVDASGSLVS DTHHRRLSGA QKLIVGGVVL ALSLSLIWLG GREKKENGDA  60
   61 PPSTMIATNT KPFHPAPIDV TLDPPAAQEA VQPTAPPPAR SEPERHEPRP EETPIFAYTS 120
  121 GDQGTSKRVQ QGETDRRREG NGEDSPLPKV EVSAENDLSI RMKPTELQPT RATLLPHPDF 180
  181 MVTEGTIIPC ILQTAIDTSL AGYVKCVLPW DVRGTTNNVV LLDRGTTVVG EIQRGLQQGD 240
  241 ARVFVLWDRA ETPDHAMISL ASPSADELGR SGLPGTVDNH FWQRFSGAML LSVVQGAFQA 300
  301 ASTYAGSSGG GTSFNSVQNN GEQTADTALK ATINIPPTLK KNQGDTVSIF VARDLDFSGI 360
  361 YQLRMAGRAA RGRDRRP

Type	Start	End	Confidence
Cytoplasmic	1	32	0.70
Transmembrane Helix	33	51	0.78
Non-Cytoplasmic	52	377	0.92