YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VIRB6_AGRFC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFTIPAPFT AIHTIFDLAF TTSLDTMLGT IQEAVSAPLV ACVTLWIIVQ GILVMRGEID  60
   61 TRGGITRVIT VTVVVALVVG QANYHDYVVS VFEETIPNFI QQFSGSGLPL QTIPAQLDTM 120
  121 FALTQAAFQR IASEIGPMND QDILAFQGAQ WVFYGTLWSA FGIYDAVGIL TKVLLAIGPL 180
  181 ILTGYIFDRT RDIAAKWIGQ LITYGLLLLL LNLVATIVIL TEATALTLML GVITLAGTTA 240
  241 AKIIGLYELD MFFLTGDALI VALPAIAGNI GGSYWSGATQ SANSLYRRFA QVDRR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.53
Transmembrane Helix	9	28	0.54
Non-Cytoplasmic	29	33	0.75
Transmembrane Helix	34	54	0.91
Cytoplasmic	55	62	0.89
Transmembrane Helix	63	84	0.87
Non-Cytoplasmic	85	160	0.82
Transmembrane Helix	161	187	0.80
Cytoplasmic	188	196	0.86
Transmembrane Helix	197	219	0.87
Non-Cytoplasmic	220	224	0.63
Transmembrane Helix	225	246	0.78
Cytoplasmic	247	252	0.66
Transmembrane Helix	253	275	0.84
Non-Cytoplasmic	276	295	0.68