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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR4_DANRE
Protein type: Globular with Signal Peptide
Type Confidence: 0.38
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLKTSVKA FFTLHVLFSC ISHGLVEGSR LPDPQLLPDG DTHLQHVGGT LTLICRGSTA  60
   61 LHWRLASRNV SSVRIESCEE RLHKHCSKLV IHNLRHNDTG IYSCSHKKSS DHEVSTYVFV 120
  121 KDPHHPFVEA YSLPHPLFAY RNDPYFVVPC RTTYPNQNVI LETQMNPMAD DVKRGVQWDP 180
  181 KKGFTVPLKP YDSYHLITCL TRVDNAEFSS VYLLKRLTME IKNLAIEPER PRVLVGDTLI 240
  241 LNCSAETTYN GRIHFEWEFH KERINRTHHF STTPVQLAQI MVMSKALIVP NVTMEDKGTY 300
  301 TCTGSIEFKK LQMSTKVIVY EHPFLNVTHN KRKFTSTVEG RRVQFEPRVN AVPAPDRVLW 360
  361 YKDGVAISEN STCYETAGYN LTIKQVRQKD AGIFTIALSN QERGLYRNIS YKLEVRVKPK 420
  421 IFEEDVAPAG PQTFRYDQRH KLTCTAFGIP MPNITWFWQP CDPSANLTEC KLYTDPLPIE 480
  481 NVDDHFPQNP IKDVNSKVGL LKSKNRTIST LVVKTANVSG VYSCTARNEL GNRTMRIPFY 540
  541 VDDHPQPFEI EPSTAVAGDD ITLTCRGTRY LYDRLTWYDP LGHKVPKDET TLRIEPYTIS 600
  601 LSIKLPNVSR NHTLGYECQA LKINTNKVVN VTSALTIDER QGPWLMQNLT NQDVNSSSTL 660
  661 TLACLAYGVP APFITWYKDK TPVTEGPGIT LKDDGTLIIE RVKKDDEGIY ECRASNDGGE 720
  721 AKTSAVITVV GEDGKPNIEV IILVSTGAAA TFLWIMLILF IRKLRKPSSA DLKTGYLSII 780
  781 MDPEQMPLDE QCDRLPYDSN KWEFPQDRLR LGKTLGHGAF GKVVEASAFG IDKISTCKTV 840
  841 AVKMLKVGAT NNEWRALMSE LKILIHIGHH LNVVNLLGAC TKRGGPLMII VEFCKYGNLS 900
  901 NYLRSKRGDF VVYKSQDGKA VRSSSGCDLS ELIKRRLESV ASTGSSASSG FIEDKSYCDS 960
  961 EEEEEEQEDL YKKVLTLEDL ICYSFQVAKG MEFLASRKCI HRDLAARNIL LSENNVVKIC1020
 1021 DFGLARDVYK DPDYVRKGDA RLPLKWMAPE AIFDKIYTTQ SDVWSFGVLM WEIFSLGASP1080
 1081 YPGLHIDEEF CCRLKEGTRM KAPEYSSSEI YQTMLDCWHG EPSQRPTFTE LVERLGDLLQ1140
 1141 ASVQQEGKHY IPINTALLTK ADPSNQSPTE ETSTRPVSLR DSGTAWNIKI RPESVKTFDE1200
 1201 VILENGTNKI HEGGQSDSGI GLSSDDLKTL KRLESLARPR SFMSRAMKRK SKESVLLEGE1260
 1261 MDKYPPLVPS LSLEDSSLDS EMECHSPPPD YNYVVRYSTP PV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle