YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLCPVYAP FFGAMGCTAA IVFTCLGASY GTAKSGVGIA AMGVLRPDLI VKNIVPVIMA  60
   61 GIIGIYGLVV SVLISDALTQ DHYALYTGFI QLGAGLAVGL AGLAAGFAIG IVGDAGVRGT 120
  121 AQQPRLFVGM ILILIFAEVL GLYGLIVALL MNSKATLNTS C

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	33	0.84
Cytoplasmic	34	49	0.78
Transmembrane Helix	50	74	0.85
Non-Cytoplasmic	75	88	0.75
Transmembrane Helix	89	113	0.86
Cytoplasmic	114	125	0.73
Transmembrane Helix	126	150	0.89
Non-Cytoplasmic	151	161	0.83