YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL_NEPNO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEGSPMYS PFFGVMGAAS AMVFSALGAA YGTAKSGVGI SAMSVMRPEL IMKCIIPVVM  60
   61 AGIIAIYGLV VAVLIAGKLD EAPTYTLYQG FVHMGAGLSV GLSGLAAGFA IGIVGDAGVR 120
  121 GTAQQPRLYV GMILILIFAE VLGLYGLIVA IFLYTKTSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	34	0.90
Cytoplasmic	35	53	0.83
Transmembrane Helix	54	76	0.94
Non-Cytoplasmic	77	92	0.84
Transmembrane Helix	93	115	0.90
Cytoplasmic	116	128	0.78
Transmembrane Helix	129	153	0.90
Non-Cytoplasmic	154	159	0.83