YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATL_CANTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLCPVYAP FFGSIGCAAA IVFTCFGASY GTAKSGVGIC ATSVTRPDLL VKNVVPVVMA  60
   61 GIIAIYGLVV SVLVSDSLSQ KQALYTGFIQ LGAGLSVGLS GLAAGFAIGI VGDAGVRGTA 120
  121 QQPRLFVGMI LILIFAEVLG LYGLIVALLL NSRASQDVTC

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.56
Transmembrane Helix	8	33	0.84
Cytoplasmic	34	48	0.57
Transmembrane Helix	49	74	0.81
Non-Cytoplasmic	75	87	0.55
Transmembrane Helix	88	112	0.86
Cytoplasmic	113	124	0.51
Transmembrane Helix	125	149	0.88
Non-Cytoplasmic	150	160	0.58