YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_PSEPK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDFWTAFQA IILGVVEGLT EFLPISSTGH QIIVADLIGF GGERAMAFNI IIQLAAILAV  60
   61 VWEFRSKIFE VVFGLTNQPK ARRFTGNLLL AFMPAVVLGV LFADLIHEYL FNPVTVAAAL 120
  121 VVGGVIMLWA ERREHRVEVD HVDDMRWSHA LKIGFIQCLA MIPGTSRSGS TIIGGLLFGL 180
  181 SRKAATEFSF FLAMPTMVGA AVYSGYKYRD LFQPGDLPVF ALGFVTSFIF AMIAVRALLK 240
  241 FIANHSYAAF AWYRIVFGLF ILATWQFGWV DWSTAHG

Type	Start	End	Confidence
Cytoplasmic	1	6	0.85
Transmembrane Helix	7	28	0.80
Non-Cytoplasmic	29	44	0.79
Transmembrane Helix	45	64	0.93
Cytoplasmic	65	83	0.93
Transmembrane Helix	84	103	0.96
Non-Cytoplasmic	104	109	0.74
Transmembrane Helix	110	130	0.90
Cytoplasmic	131	184	0.73
Transmembrane Helix	185	206	0.74
Non-Cytoplasmic	207	216	0.70
Transmembrane Helix	217	239	0.90
Cytoplasmic	240	249	0.69
Transmembrane Helix	250	269	0.95
Non-Cytoplasmic	270	277	0.71