YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126193721, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEWWTAFQAF ILGVVEGLTE FLPISSTGHQ IIVADLIGFG GERAKAFNII IQLAAILAVV  60
   61 WEFRGKIFQV VRDLPSQRQA QRFTANLLIA FFPAVVLGVL FADLIHEWLF NPITVALALV 120
  121 VGGVVMLWAE RRKHVIRAEH VDDMTWKDAL KIGCAQCLAM IPGTSRSGAT IIGGLLFGLS 180
  181 RKAATEFSFF LAMPTMVGAA VYSGYVYRDL FRPEDLPVFA VGFVTSFVFA MLAVRALLKF 240
  241 IGNHSYAAFA WYRIAFGLLI LATWQFHLID WSTAGEV

Type	Start	End	Confidence
Cytoplasmic	1	8	0.77
Transmembrane Helix	9	29	0.77
Non-Cytoplasmic	30	43	0.79
Transmembrane Helix	44	63	0.87
Cytoplasmic	64	82	0.90
Transmembrane Helix	83	102	0.95
Non-Cytoplasmic	103	108	0.75
Transmembrane Helix	109	129	0.93
Cytoplasmic	130	186	0.86
Transmembrane Helix	187	206	0.92
Non-Cytoplasmic	207	215	0.74
Transmembrane Helix	216	238	0.91
Cytoplasmic	239	248	0.74
Transmembrane Helix	249	268	0.95
Non-Cytoplasmic	269	277	0.76