YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_PHOLL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLSTLFHA AILGVVEGLT EFLPVSSTGH MIIVGHMLGF TGDKAETFEV IIQLGSILAV  60
   61 VVVFWRRLFG LIGIHFGEVP HEGKTNGKLK LSHIILAMLP AVTLGLMFHD VIKSLFNPQS 120
  121 VMYALVIGGV LLITAEILKP KTPKAEGLDD ITYRQAFMIG CFQCLALWPG FSRSGATISG 180
  181 GMLMGVNRYT ASEFSFILAV PMMMGASGLD LYKSLHFLSA SDIPMFAVGF VTAFVVALVA 240
  241 IKTFLALIKR ISFIPFAIYR FIVAAAVYWV FM

Type	Start	End	Confidence
Cytoplasmic	1	9	0.79
Transmembrane Helix	10	33	0.77
Non-Cytoplasmic	34	49	0.73
Transmembrane Helix	50	69	0.94
Cytoplasmic	70	88	0.87
Transmembrane Helix	89	112	0.86
Non-Cytoplasmic	113	119	0.75
Transmembrane Helix	120	138	0.90
Cytoplasmic	139	150	0.83
Transmembrane Helix	151	172	0.71
Non-Cytoplasmic	173	190	0.60
Transmembrane Helix	191	212	0.75
Cytoplasmic	213	222	0.50
Transmembrane Helix	223	245	0.89
Non-Cytoplasmic	246	250	0.48
Transmembrane Helix	251	271	0.89
Cytoplasmic	272	272	0.59