YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_ECOHS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMHSLLIA AILGVVEGLT EFLPVSSTGH MIIVGHLLGF EGDTAKTFEV VIQLGSILAV  60
   61 VVMFWRRLFG LIGIHFGRPL QHEGESKGRL TLIHILLGMI PAVVLGLLFH DTIKSLFNPI 120
  121 NVMYALVVGG LLLIAAECLK PKEPRAPGLD DMTYRQAFMI GCFQCLALWP GFSRSGATIS 180
  181 GGMLMGVSRY AASEFSFLLA VPMMMGATAL DLYKSWGFLT SGDIPMFAVG FITAFVVALI 240
  241 AIKTFLQLIK RISFIPFAIY RFIVAAAVYV VFF

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	33	0.78
Non-Cytoplasmic	34	49	0.81
Transmembrane Helix	50	69	0.95
Cytoplasmic	70	89	0.91
Transmembrane Helix	90	110	0.96
Non-Cytoplasmic	111	119	0.72
Transmembrane Helix	120	139	0.82
Cytoplasmic	140	189	0.50
Transmembrane Helix	190	210	0.71
Non-Cytoplasmic	211	223	0.52
Transmembrane Helix	224	246	0.88
Cytoplasmic	247	251	0.58
Transmembrane Helix	252	272	0.87
Non-Cytoplasmic	273	273	0.64