YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPPP_COREF
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQTYLLAS AVEPVAAENM SWTQTLVLSV VQGLTEFLPI SSSGHLRIIS ELFWGADAGA  60
   61 SFTAVVQLGT EAAVLVYFAR EIWQILTGWF AGVFNKDRRG RDYKMGWMII VATIPVVVLG 120
  121 VLGKDLIRDA LRNMWITATV LVLFSFVFIL AEKVGKKDRG YDELNMRDAL VMGFAQCLAL 180
  181 IPGVSRSGGT ISAGLFMGLN REVAAKFSFL LAIPAVLGSG LYSLPDAFDP STGQAASGLQ 240
  241 LTIGTLVAFL VGYASIAWLM KFVANHSFSW FAAYRIPAGL LVMLLLWLGY LNP

Type	Start	End	Confidence
Cytoplasmic	1	51	0.61
Transmembrane Helix	52	66	0.49
Non-Cytoplasmic	67	67	0.13
Transmembrane Helix	68	83	0.53
Cytoplasmic	84	104	0.65
Transmembrane Helix	105	123	0.96
Non-Cytoplasmic	124	133	0.57
Transmembrane Helix	134	151	0.96
Cytoplasmic	152	169	0.70
Transmembrane Helix	170	190	0.63
Non-Cytoplasmic	191	202	0.44
Transmembrane Helix	203	225	0.84
Cytoplasmic	226	235	0.45
Transmembrane Helix	236	260	0.84
Non-Cytoplasmic	261	270	0.42
Transmembrane Helix	271	291	0.94
Cytoplasmic	292	293	0.47