YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SO4274
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLIYFIKAF FLGVIEGITE FLPISSTGHL ILIGDWINFS SNEEKVFEVV IQLGGILAVC  60
   61 WLFRDKIINL INGVLKSDPV AQRFAVIVMI SFLPSAIIGA LFIHDIKNVL FNTTVVATAL 120
  121 IVGGLIILWV ENRKDSEKFK IENIEKIGFK QAIIIGIAQC IAMIPGTSRS GATIVGGMLS 180
  181 GVSRKAATEY SFFLAIPTML GAAIYDASKN YHLLNTDDIL AILIGFSAAF ISALIVVNAL 240
  241 IRFVAKHSLS VFAWYRIALG LIIFSVN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	33	0.82
Non-Cytoplasmic	34	45	0.88
Transmembrane Helix	46	63	0.91
Cytoplasmic	64	83	0.84
Transmembrane Helix	84	103	0.97
Non-Cytoplasmic	104	109	0.82
Transmembrane Helix	110	130	0.95
Cytoplasmic	131	150	0.88
Transmembrane Helix	151	168	0.72
Non-Cytoplasmic	169	218	0.53
Transmembrane Helix	219	241	0.91
Cytoplasmic	242	247	0.49
Transmembrane Helix	248	266	0.63
Non-Cytoplasmic	267	267	0.55