YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260456, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIITAFIL GIVEGLAEFL PISSTGHLIL VGHLLGFEGE RAKTFEIVIQ LGAILAIAIL  60
   61 YHKRLVSLCN LKPLLRKEKK FNAFHVFLGV FPAVVAGLLL HDVIKTYLFQ PYTVVIGLVA 120
  121 GAILMIFAEV KKQEATSYSL DDLTYRQALT IGLFQCLAVY PGFSRAGSTI SGGLLAKVNY 180
  181 KTASEFSFLI ALPVMVGATG LDLLKSWTYL SVDDIPMFAV GFITSFIVAM LAVVTFLKLL 240
  241 EKIGLKPFAY YRILLAILFT VFVLL

Type	Start	End	Confidence
Cytoplasmic	1	7	0.88
Transmembrane Helix	8	31	0.80
Non-Cytoplasmic	32	43	0.75
Transmembrane Helix	44	62	0.90
Cytoplasmic	63	80	0.91
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	107	0.82
Transmembrane Helix	108	128	0.92
Cytoplasmic	129	185	0.75
Transmembrane Helix	186	204	0.77
Non-Cytoplasmic	205	216	0.72
Transmembrane Helix	217	237	0.95
Cytoplasmic	238	247	0.73
Transmembrane Helix	248	264	0.92
Non-Cytoplasmic	265	265	0.85