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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UNC5C_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.65
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGLRATAA RCGLGLGYLL QMLVLPALAL LSASGTGSAA QDDDFFHELP ETFPSDPPEP  60
   61 LPHFLIEPEE AYIVKNKPVN LYCKASPATQ IYFKCNSEWV HQKDHVVDER VDETSGLIVR 120
  121 EVSIEISRQQ VEELFGPEDY WCQCVAWSSA GTTKSRKAYV RIAYLRKTFE QEPLGKEVSL 180
  181 EQEVLLQCRP PEGIPMAEVE WLKNEDIIDP VEDRNFYITI DHNLIIKQAR LSDTANYTCV 240
  241 AKNIVAKRKS TTATVIVYVN GGWSTWAEWS VCNSRCGRGY QKRTRTCTNP APLNGGAFCE 300
  301 GQSVQKIACT TLCPVDGRWT SWSKWSTCGT ECTHWRRREC TAPAPKNGGK DCDGLVLQSK 360
  361 NCTDGLCMQA APDSDDVALY VGIVIAVTVC LAITVVVALF VYRKNHRDFE SNIIDSSALN 420
  421 GGFQPVNIKA ARQDLLAVPP DLTSAAAMYR GPVYALHDVS DKIPMTNSPI LDPLPNLKIK 480
  481 VYNSSGAVTP QDDLAEFSSK LSPQMTQSLL ENEALNLKNQ SLARQTDPSC TAFGTFNSLG 540
  541 GHLIIPNSGV SLLIPAGAIP QGRVYEMYVT VHRKENMRPP MEDSQTLLTP VVSCGPPGAL 600
  601 LTRPVILTLH HCADPNTEDW KIQLKNQAVQ GQWEDVVVVG EENFTTPCYI QLDAEACHIL 660
  661 TENLSTYALV GQSTTKAAAK RLKLAIFGPL CCSSLEYSIR VYCLDDTQDA LKEVLQLERQ 720
  721 MGGQLLEEPK ALHFKGSIHN LRLSIHDITH SLWKSKLLAK YQEIPFYHIW SGSQRNLHCT 780
  781 FTLERLSLNT VELVCKLCVR QVEGEGQIFQ LNCTVSEEPT GIDLPLLDPA STITTVTGPS 840
  841 AFSIPLPIRQ KLCSSLDAPQ TRGHDWRMLA HKLNLDRYLN YFATKSSPTG VILDLWEAQN 900
  901 FPDGNLSMLA AVLEEMGRHE TVVSLAAEGQ Y

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle