YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8979037, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	48	0.93
Non-Cytoplasmic	49	67	0.85
Transmembrane Helix	68	89	0.82
Cytoplasmic	90	98	0.84
Transmembrane Helix	99	130	0.77
Non-Cytoplasmic	131	132	0.51
Transmembrane Helix	133	148	0.63
Cytoplasmic	149	157	0.65
Transmembrane Helix	158	181	0.77
Non-Cytoplasmic	182	187	0.74
Transmembrane Helix	188	206	0.88
Cytoplasmic	207	257	0.92
Transmembrane Helix	258	277	0.90
Non-Cytoplasmic	278	297	0.85
Transmembrane Helix	298	321	0.88
Cytoplasmic	322	330	0.90
Transmembrane Helix	331	351	0.91
Non-Cytoplasmic	352	360	0.76
Transmembrane Helix	361	382	0.89
Cytoplasmic	383	390	0.84
Transmembrane Helix	391	413	0.86
Non-Cytoplasmic	414	423	0.79
Transmembrane Helix	424	444	0.94
Cytoplasmic	445	455	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVWTKFFQP PKHIKEIEDQ EVVKKKYKYW RIRIFYSMFI GYIFYYFTRK SFTFAMPTLI  60
   61 ADLGFDKAQL GIIGSTLYFS YGISKFVSGV MSDQSNPRYF MAIGLMITGL TNIFFGMSSS 120
  121 IVLFALWWGL NGWFQGWGWP PCARLLTHWY AKSERGTWWS VWSTSHNIGG ALIPILTGFI 180
  181 IDYSGWRGAM YVPGILCIGM GLVLINRLRD TPQSLGLPPI EKYKRDPHHA HHEGKSASEG 240
  241 TEEIERELST REILFTYVLT NQWLWFLAAA SFFIYIVRMA VNDWSALFLI ETKHYAAVKA 300
  301 NFCVSLFEIG GLFGMLVAGW LSDKISKGNR GPMNVLFSLG LLFAILGMWF SRSHNQWWVD 360
  361 GTLLFVIGFF LYGPQMMIGL AAAELSHKKA AGTASGFTGW FAYFGATFAG YPLGKVTDVW 420
  421 GWKGFFIALL ACASIALLLF LPTWNATEKN TRSKA