YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11280304
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLKRLTVI VGTFYRYRLA GLCASLMGSG WICALLKMMP QSSKLKNEPP AVRLRLALES  60
   61 LGPIFIKFGQ VLSTRPDLIP HDYAVELAKL QDKVPPFDAR LSREQIEKSL GQSIEKLYAE 120
  121 FETEPIASAS IAQVHKARLH SGERVAVKVL RPNLLPLIEQ DLSLMRFGAA WVERLFSDGR 180
  181 RLKPLEVVAE FDKYLHDELD LMREAANAGQ LGRNFHNSNM LIVPKVFYDY CTSDVLTIEW 240
  241 MDGTPVADIA KLKADGIDLH KLADYGVEIF FTQVFRDGFF HADMHPGNIL VAADNRYIAL 300
  301 DFGIVGTLTD YDKRYLAINF LAFFNRDYRR VATAHIESGW VPADTRAEEL EAAVRAVCEP 360
  361 VFNKPISQIS FGLVLMRLFE VSRRFNVEIQ PQLVLLQKTL LNIEGLGRQL DPDLDLWKTA 420
  421 KPFLVKWMNG QVGPKALWRN LKNEAPDWAQ IIPSLPRKIS ALIDENRQQE MRDAYIHLVK 480
  481 VQQRQSLWLA VIAVVLLLIL LLK

Type	Start	End	Confidence
Cytoplasmic	1	16	0.62
Transmembrane Helix	17	35	0.66
Non-Cytoplasmic	36	485	0.98
Transmembrane Helix	486	502	0.87
Cytoplasmic	503	503	0.89