YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TTDT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	32	0.78
Transmembrane Helix	33	49	0.87
Cytoplasmic	50	54	0.68
Transmembrane Helix	55	74	0.93
Non-Cytoplasmic	75	92	0.82
Transmembrane Helix	93	116	0.86
Cytoplasmic	117	136	0.78
Transmembrane Helix	137	155	0.87
Non-Cytoplasmic	156	192	0.79
Transmembrane Helix	193	219	0.81
Cytoplasmic	220	231	0.72
Transmembrane Helix	232	255	0.87
Non-Cytoplasmic	256	305	0.76
Transmembrane Helix	306	328	0.83
Cytoplasmic	329	338	0.79
Transmembrane Helix	339	360	0.88
Non-Cytoplasmic	361	372	0.68
Transmembrane Helix	373	404	0.71
Cytoplasmic	405	417	0.47
Transmembrane Helix	418	442	0.82
Non-Cytoplasmic	443	461	0.65
Transmembrane Helix	462	484	0.91
Cytoplasmic	485	487	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSTEWWRY LAPLAVIAII ALLPVPAGLE NHTWLYFAVF TGVIVGLILE PVPGAVVAMV  60
   61 GISIIAILSP WLLFSPEQLA QPGFKFTAKS LSWAVSGFSN SVIWLIFAAF MFGTGYEKTG 120
  121 LGRRIALILV KKMGHRTLFL GYAVMFSELI LAPVTPSNSA RGAGIIYPII RNLPPLYQSQ 180
  181 PNDSSSRSIG SYIMWMGIVA DCVTSAIFLT AMAPNLLLIG LMKSASHATL SWGDWFLGML 240
  241 PLSILLVLLV PWLAYVLYPP VLKSGDQVPR WAETELQAMG PLCSREKRML GLMVGALVLW 300
  301 IFGGDYIDAA MVGYSVVALM LLLRIISWDD IVSNKAAWNV FFWLASLITL ATGLNNTGFI 360
  361 SWFGKLLAGS LSGYSPTMVM VALIVVFYLL RYFFASATAY TSALAPMMIA AALAMPEIPL 420
  421 PVFCLMVGAA IGLGSILTPY ATGPSPIYYG SGYLPTADYW RLGAIFGLIF LVLLVITGLL 480
  481 WMPVVLL