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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPC4_BOVIN, TRP...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.20
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMAQFYYKR NVNAPYRDRI PLRIVRAESE LSPSEKAYLN AVEKGDYASV KKSLEEAEIY  60
   61 FKININCIDP LGRTALLIAI ENENLELIEL LLSFNVYVGD ALLHAIRKEV VGAVELLLNH 120
  121 KKPSGEKQVP PILLDKQFSE FTPDITPIIL AAHTNNYEII KLLVQKGVSV PRPHEVRCNC 180
  181 VECVSSSDVD SLRHSRSRLN IYKALASPSL IALSSEDPFL TAFQLSWELQ ELSKVENEFK 240
  241 SEYEELSRQC KQFAKDLLDQ TRSSRELEII LNYRDDNSLL EEQSGNDLAR LKLAIKYRQK 300
  301 EFVAQPNCQQ LLASRWYDEF PGWRRRHWAV KMVTCFIVGL LFPVFSVCYL IAPKSPLGLF 360
  361 IRKPFIKFIC HTASYLTFLF LLLLASQHID RSDLNRQGPP PTIVEWMILP WVLGFIWGEI 420
  421 KQMWDGGLQD YIHDWWNLMD FVMNSLYLAT ISLKIVAFVK YSALNPRESW DMWHPTLVAE 480
  481 ALFAIANIFS SLRLISLFTA NSHLGPLQIS LGRMLLDILK FLFIYCLVLL AFANGLNQLY 540
  541 FYYEETKGLS CKGIRCEKQN NAFSTLFETL QSLFWSIFGL INLYVTNVKA QHEFTEFVGA 600
  601 TMFGTYNVIS LVVLLNMLIA MMNNSYQLIA DHADIEWKFA RTKLWMSYFE EGGTLPTPFN 660
  661 VIPSPKSLWY LIKWIWTHLC KKKMRRKPES FGTIGRRAAD NLRRHHQYQE VMRNLVKRYV 720
  721 AAMIRDAKTE EGLTEENFKE LKQDISSFRF EVLGLLRGSK LSTVQSAQGT KESSNSADSD 780
  781 EKSDNEGSSK DKKKNFSLFD LTTLIHPRSA AIAAERHTIS NGSALVVQEP PREKQRKVNF 840
  841 VTDIRHFGLF HRRSKQHAAA EQNANQIFSV SEGVARQQAE GPLERSIQLE SRTLASRGDL 900
  901 NIPGLSEQCI LVDHRERNTD SLGVQVSKRV CSFKSEKVVV EDTVPIIPKE KKHAKEEDSS 960
  961 ADYDANLTDT ITHEDYVTTR L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle