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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRK1_SACUV
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIRGTMSRV PTLASFEVRY KKSFGHKFRD FIALCGHYCS PIKKYIFPNF IAVHYFYTIV  60
   61 LTLITSILLY PVKNIRYIDA LFLAAGAVTQ GGLNTVDVNN LTLYQQIILY IICCISTPIA 120
  121 VHSCLAFVRL YWFERYFDGI RDSSRLNFKM RRTKTILERE LTARTMTKSK TGGTQRVSRP 180
  181 GKSDKRDDFQ EKLFNGEMVN RDEQDSVHSS HNSRDSNSNA NTNSSNNNSI NHNGSSGSLD 240
  241 DYVREDKADE VEKYHGNKSY SSVGSSSNTA TDENISQKLK PSSLRFDESQ NKRKRTGAPS 300
  301 EKFAKRRGSR DITPEDMYRS IMMLQGEHEG TAEDEGPPLV IGSPTDGTRN MDNGSESKSA 360
  361 PTMNESKIRI QDKGAKISLD QDSVLHSSNS SACTSDEDSL PTNFGGTTPS LSAKPRESSS 420
  421 GPIAFTEGEN ADRKQGPSIQ FNITKPPRKA SKSKRVSTMD DLNPRSIFPH QKKSSKGYIM 480
  481 KHLPKARRIR QQIKRRLSTG SIDKNSSSDA LDRGLISGLN DDDDGNEGDN MEEYFADNES 540
  541 GDEDDRMQQS EPQSGSELKL KQQQQHQLQQ NLHRMYKTKS FDDNRSKPVL MERSKTIDMA 600
  601 EARDLNELAR TPDFQKMVYK NWKAHHRNKP NFKRRGWNGK MFEHGPYTSD SDHNYQDNGN 660
  661 NSNSIVHYAE SILHRDNSHR NGSEDVSSDS NETTYPLNGN NDHSQNDANG YPTYNDEEEG 720
  721 YYGLHFDSDY NLDPHHALSS NASKNYLSWQ PTIGRNSNFL GLTRAQKDEL GGVEYRAIKL 780
  781 LCTILVVYYV GWHIVSFVML VPWINLKKHY SDIVRSDGVS PTWWGFWTAM SAFNDLGLTL 840
  841 TPDSMMSFDK AVYPLIVMIW FIIIGNTGFP ILLRCIIWIM FKLSPDLSQM RESLGFLLDH 900
  901 PRRCFTLLFP KAATWWLLLT LVGLNFTDWI LFIILDFGST VVKSLSKGYR VLVGLFQSVS 960
  961 TRTAGFSVVD LSQLHPSIQV SYMLMMYVSV LPLAISIRRT NVYEEQSLGL YGEMGGKPED1020
 1021 TDTEEDGDCD DEDDDNEEEE SHEGGSSQRG KSKKETKKKK KRKENENPNE ESTKSFIGAH1080
 1081 LRRQLSFDLW FLFLGLFIIC ICERDKIKDI QRPNFNVFTI LFEIVSAYGT VGLSLGYPNT1140
 1141 NQSFSRQLTT LSKLIIIAML IRGKNRGLPY SLDRAIILPS DRLEHIDHIE DLKLKRQART1200
 1201 DTDDPMTEHL KRSISDAKHR WDELKHKRSL SRSSKRSTKT N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle