YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T2R40_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIITTNSDY FAHRYEVIIP FVVSTICSIV GIIGNGFITV IYGTEWVRSK RLPTGENLML  60
   61 MLSFSRLLLQ IWMMVEITYS LLFPIIYNHN AMYKLFKAIS VFLNYCNLWF AAWLNVFYCL 120
  121 KIVNLAHPLF LLMKQKIIGL MPRLLSLSVL VSFSLSSFFS KDILNVYVNT SVPIPSSNST 180
  181 KMKYIFMINV LSLAFLYYMG IFLPLFMFIM AATLLITSLK RHTLHMENST TGSRDSSMEA 240
  241 HVGAIKSTSH SLILYIINAL ALFISMSNIL GAYSVWNSLC NIIMTAYPAG QSVHLILRNP 300
  301 GLRRAWRRFQ HHVHLYLKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.95
Transmembrane Helix	18	42	0.92
Cytoplasmic	43	63	0.86
Transmembrane Helix	64	87	0.82
Non-Cytoplasmic	88	100	0.84
Transmembrane Helix	101	125	0.72
Cytoplasmic	126	139	0.76
Transmembrane Helix	140	159	0.92
Non-Cytoplasmic	160	193	0.92
Transmembrane Helix	194	216	0.93
Cytoplasmic	217	251	0.92
Transmembrane Helix	252	272	0.90
Non-Cytoplasmic	273	281	0.62
Transmembrane Helix	282	302	0.80
Cytoplasmic	303	319	0.92