YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR140_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATVKCTLL IILGVEIIIG CLGNGFIAVV NIMDWAKRRK ISLVDQIFTA LAISRLAFVW  60
   61 SLLTVLFTSE LYSALMTTRK VLIIFNNSWT VINHFNIWLA TCLSIFYFLM IANFSNSIFL 120
  121 SLRWRVKTVV SVTLLMSLLL LFVNVLVINT FIVISVDVYK VNTSYSSHSD NNIHISRIFL 180
  181 FTNTIFTFIP FSVTLTIFLL LIFSLWTHLK NMQHNAKDSR DPSTTAHIKA LQMMVTFLLL 240
  241 YTIFFLALVM QSSKMKFLSS TVFNYFFEVI SLAFPSGHSC VLILGNSKLR QTFISTVWWL 300
  301 KSSFNAAELP GP

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	46	0.85
Transmembrane Helix	47	68	0.81
Non-Cytoplasmic	69	94	0.83
Transmembrane Helix	95	116	0.89
Cytoplasmic	117	128	0.79
Transmembrane Helix	129	154	0.84
Non-Cytoplasmic	155	184	0.93
Transmembrane Helix	185	209	0.88
Cytoplasmic	210	229	0.91
Transmembrane Helix	230	250	0.93
Non-Cytoplasmic	251	264	0.86
Transmembrane Helix	265	285	0.84
Cytoplasmic	286	312	0.86