YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	T2R38_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLTPVLTV SYEAKISFLF LSAMEFAVGI LANAFIVLVN VWDVVKKQPL NNCDIALLCL  60
   61 SITRLFLQGL LLLDAIQLAC FQQMKDPLSH NYQAILTLWM IANQVSLWLA ACLSLLYCSK 120
  121 IVRFSHTFPL HVASWVSRRF LQMLLVVLLL SCICTALCLW DFFCRSHSTV TSLLHLNSTE 180
  181 FSLQIAKLNF FYSFIFCNVG SVPPSLAFLV SSGVLVISLG SHMRTMKSQT SSSGDPSLEA 240
  241 HIRAIIFLIS FFCFYVVSFC AALISIPLLM LWHNKGGVMI CIGMMAACPS GHAAILISGN 300
  301 AKLRRAIETM LFWFQSRQKV RPVHKVPPRT L

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.76
Transmembrane Helix	18	42	0.86
Cytoplasmic	43	54	0.65
Transmembrane Helix	55	76	0.67
Non-Cytoplasmic	77	97	0.84
Transmembrane Helix	98	119	0.90
Cytoplasmic	120	139	0.90
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	199	0.91
Transmembrane Helix	200	223	0.86
Cytoplasmic	224	243	0.93
Transmembrane Helix	244	268	0.90
Non-Cytoplasmic	269	275	0.81
Transmembrane Helix	276	297	0.92
Cytoplasmic	298	331	0.95