YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR136_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSFLVSIAS IAMLVKIVLG TFANVFIVLV NFTDCIKKRK FLLADRILTV LAIFRFDLLW  60
   61 IILMNWSSSV FHVGLYFQVR FCICVVWIVT NHFNTWLANI LSILYLLKID NFSNLIFLGL 120
  121 KGKIKCPYIV LLPCFVLLFP NLIMVTICET TQANGHQGNL TGKTKLTYFT NLIAMTFTLG 180
  181 SLVPFTTFMI CFLLLICSLC KHLRTMRLYG KGSQGPSAST HIKVLQVLIS FLLLFSMFIL 240
  241 LLIISDYNYT KSLEEPIHLI CQVIGTLYPS RHSYILLWGN KRIKQAFVLA MVQVRARFWL 300
  301 KEKKP

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	46	0.78
Transmembrane Helix	47	64	0.85
Non-Cytoplasmic	65	82	0.62
Transmembrane Helix	83	107	0.70
Cytoplasmic	108	127	0.82
Transmembrane Helix	128	148	0.93
Non-Cytoplasmic	149	176	0.92
Transmembrane Helix	177	200	0.88
Cytoplasmic	201	223	0.87
Transmembrane Helix	224	244	0.95
Non-Cytoplasmic	245	305	0.62