YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR135_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGHTVLGC QTTDKTVVTL FIILVLLCLV AVVGNGFIII ALGMKWLLRR TLSAHNKLLI  60
   61 SLAASRFCLQ CVVIGKNIYV FLNPTSFPYN PVIQLLNLMW DFLTAATIWL CSLLGFFYCV 120
  121 KIATLTHPVF VWLKYRLPGW VPWMLLSAVG MSSLTSILCF IGNYMIYQNH AKSGHQPWNV 180
  181 TGNSLRHSLE KFYFFSIKII MWTIPTVVFS IFMSLLLVSL VRHMKKTFLA LSELRDVWAQ 240
  241 AHFKALLPLL SFIVLFISCF LTLVLSSASN TPYQEFRYWM WQVVIHLCTV IHPIVILFSN 300
  301 PVLRVVIKRG CC

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.94
Transmembrane Helix	18	42	0.91
Cytoplasmic	43	57	0.85
Transmembrane Helix	58	80	0.84
Non-Cytoplasmic	81	101	0.86
Transmembrane Helix	102	122	0.91
Cytoplasmic	123	139	0.87
Transmembrane Helix	140	164	0.88
Non-Cytoplasmic	165	198	0.95
Transmembrane Helix	199	221	0.92
Cytoplasmic	222	244	0.88
Transmembrane Helix	245	265	0.95
Non-Cytoplasmic	266	282	0.79
Transmembrane Helix	283	303	0.89
Cytoplasmic	304	312	0.88