YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR134_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSHSFIFI VIFCMQSLAA LLQNGFMATV LGREWVRSQG LPAGDMIMAC LAASRFCLHG  60
   61 IAVLNNFLAS AMFWTIKNYF SILWDFTNTV NFWFTTWLAI FYCVKISSFS HPIFFWIKWR 120
  121 ISRSVPRLLL GSLIIGGLSA ISSATGNTIA LQMAACENYT IYYKMMAFYL YYFRCHAMLM 180
  181 WVIPFFLFLL SIILLMFSLY RHLEQMRYHR PRTHDYSTQA HIMALKSLAF FLIFYTSYTL 240
  241 LLTVSVAHVI NVHGSWHWAW EVVTYMGISL HSTILILSNT KMRKALKIKF PDLCIPRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	30	0.89
Cytoplasmic	31	50	0.83
Transmembrane Helix	51	76	0.76
Non-Cytoplasmic	77	92	0.88
Transmembrane Helix	93	115	0.85
Cytoplasmic	116	127	0.81
Transmembrane Helix	128	150	0.86
Non-Cytoplasmic	151	176	0.91
Transmembrane Helix	177	200	0.92
Cytoplasmic	201	227	0.87
Transmembrane Helix	228	250	0.84
Non-Cytoplasmic	251	257	0.84
Transmembrane Helix	258	279	0.90
Cytoplasmic	280	298	0.96