YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOCC_MAIZE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLAVAAALP SVTPRTGVVL PRSSRRHCPR GVVPRAASSS VSSFTSPSAA AAPIYTPTPQ  60
   61 DRSLRTPHSG YHFDGTARPF FEGWYFKVSI PECRQSFCFM YSVENPLFRD GMSDLDKLLY 120
  121 RPRFTGVGAQ ILGADDKYIC QFSEKSNNFW GSRHELMLGN TFISNKESTP PQGEVPPQDF 180
  181 SRRVLEGLQV TPIWHQGFIR DDGRSNYVPN VQTARWEYST RPVYGWGDVK SKQLSTAGWL 240
  241 AAFPFFEPHW QICMARGLST GWIEWDGERF EFENAPSYSE KNWGGGFPRK WYWIQCNVFP 300
  301 GASGEVSLTA AGGLRKIGLG DTYESPSLIG IHYEGQFFEF VPWTGTVSWD IGLWGLWKMS 360
  361 GENKTHLVEI EATTAESGTA LRAPTIEAGL VPACKDTCYG DLRLQLWEKK YDGSKGEMIL 420
  421 DATSNMAALE VGGGPWFNGW KGTTVVNEVV NNIVGTPVDV ESLLPIPFLK PPGL

Type	Start	End	Confidence
Signal Peptide	1	21	0.73
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	474	0.96