YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TNFA_CAVPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTESMIRDV ELAEEQLPKK AGGPQGSRRC WCLSLFSFLL VAGATTLFCL LHFGVIGPQR  60
   61 EEQFSSGPPF RPLAQTLTLR SASQNDNDKP VAHVVANQQA EEELQWLSKR ANALLANGMG 120
  121 LSDNQLVVPS DGLYLIYSQV LFKGQGCPSY LLLTHTVSRL AVSYPEKVNL LSAIKSPCQK 180
  181 ETPEGAERKP WYEPIYLGGV FQLQKGDRLS AEVNLPQYLD FADSGQIYFG VIAL

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	56	0.93
Non-Cytoplasmic	57	234	0.99