YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TLC1_SOLTU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.96
Transmembrane Helix	110	131	0.87
Non-Cytoplasmic	132	151	0.88
Transmembrane Helix	152	170	0.92
Cytoplasmic	171	179	0.79
Transmembrane Helix	180	202	0.92
Non-Cytoplasmic	203	235	0.85
Transmembrane Helix	236	259	0.87
Cytoplasmic	260	270	0.84
Transmembrane Helix	271	290	0.93
Non-Cytoplasmic	291	308	0.86
Transmembrane Helix	309	332	0.91
Cytoplasmic	333	364	0.91
Transmembrane Helix	365	387	0.65
Non-Cytoplasmic	388	403	0.74
Transmembrane Helix	404	427	0.84
Cytoplasmic	428	437	0.67
Transmembrane Helix	438	461	0.84
Non-Cytoplasmic	462	466	0.51
Transmembrane Helix	467	485	0.62
Cytoplasmic	486	539	0.51
Transmembrane Helix	540	565	0.81
Non-Cytoplasmic	566	631	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVLQTRGL LSLPSKPKIK AFYPLPQGGL RNRFNSLSSL KPNPLNGVSL SSNGFQKVQG  60
   61 FDTKPQLFGQ KKRCFPICKA EAAAAAGAAD GQPLFVEKEQ PKFMGIELVT LKKIIPLGAM 120
  121 FFCILFNYTI LRDTKDVLVV TAKGSSAEII PFLKTWVNLP MAIGFMLLYT KLANVLSKEA 180
  181 LFYTVILPFI AFFGAFGFVL YPLSNYFHPT AFADKLLNTL GPRFLGPIAI LRIWSFCLFY 240
  241 VMAELWGSVV VSVLFWGFAN QITTVDEAKR FYPLFGLGAN VALIFSGRTV KYFSSLRSSL 300
  301 GPGVDGWAIS LKGMMSIVVM MGGAICFFYW WVNRNVALPT RSKKKKVKPN MTTMESLKFL 360
  361 VSSKYIRDLA TLVVAYGISI NLVEVTWKSK LKAQFPSPNE YSSFMGDFST ATGIATFTMM 420
  421 LLSQWIFDKY GWGAAAKITP TVLLLTGVGF FSLLLFGAPL APTLAKFGMT PLLAAVYVGA 480
  481 MQNIFSKSAK YSLFDPCKEM AYIPLDEDTK VKGKAAIDVV CNPLGKSGGA LIQQFMILTF 540
  541 GSLASSTPYL GGVLLVIVLA WLGAAKSLDG QFTQLRQEED LEKEMERASL KIPVVSQNEN 600
  601 GNGPLSSESS LNPAGGDSTN ASSEPSSPRS L