YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TDCC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	47	0.75
Transmembrane Helix	48	67	0.92
Cytoplasmic	68	96	0.88
Transmembrane Helix	97	117	0.90
Non-Cytoplasmic	118	135	0.84
Transmembrane Helix	136	156	0.93
Cytoplasmic	157	165	0.86
Transmembrane Helix	166	186	0.95
Non-Cytoplasmic	187	206	0.90
Transmembrane Helix	207	228	0.89
Cytoplasmic	229	254	0.89
Transmembrane Helix	255	279	0.83
Non-Cytoplasmic	280	312	0.90
Transmembrane Helix	313	337	0.74
Cytoplasmic	338	359	0.87
Transmembrane Helix	360	380	0.93
Non-Cytoplasmic	381	387	0.83
Transmembrane Helix	388	409	0.91
Cytoplasmic	410	421	0.87
Transmembrane Helix	422	440	0.91
Non-Cytoplasmic	441	443	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSDSIVSS QTKQSSWRKS DTTWTLGLFG TAIGAGVLFF PIRAGFGGLI PILLMLVLAY  60
   61 PIAFYCHRAL ARLCLSGSNP SGNITETVEE HFGKTGGVVI TFLYFFAICP LLWIYGVTIT 120
  121 NTFMTFWENQ LGFAPLNRGF VALFLLLLMA FVIWFGKDLM VKVMSYLVWP FIASLVLISL 180
  181 SLIPYWNSAV IDQVDLGSLS LTGHDGILIT VWLGISIMVF SFNFSPIVSS FVVSKREEYE 240
  241 KDFGRDFTER KCSQIISRAS MLMVAVVMFF AFSCLFTLSP ANMAEAKAQN IPVLSYLANH 300
  301 FASMTGTKTT FAITLEYAAS IIALVAIFKS FFGHYLGTLE GLNGLVLKFG YKGDKTKVSL 360
  361 GKLNTISMIF IMGSTWVVAY ANPNILDLIE AMGAPIIASL LCLLPMYAIR KAPSLAKYRG 420
  421 RLDNVFVTVI GLLTILNIVY KLF