YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TAAR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLCHNSANI SHTNSNWSRD VRASLYSLIS LIILTTLVGN LIVIISISHF KQLHTPTNWL  60
   61 LHSMAVVDFL LGCLVMPYSM VRTVEHCWYF GELFCKLHTS TDIMLSSASI LHLAFISIDR 120
  121 YYAVCDPLRY KAKINLAAIF VMILISWSLP AVFAFGMIFL ELNLEGVEEL YHNQVFCLRG 180
  181 CFPFFSKVSG VLAFMTSFYI PGSVMLFVYY RIYFIAKGQA RSINRANLQV GLEGESRAPQ 240
  241 SKETKAAKTL GIMVGVFLLC WCPFFFCMVL DPFLGYVIPP TLNDTLNWFG YLNSAFNPMV 300
  301 YAFFYPWFRR ALKMVLFGKI FQKDSSRSKL FL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.47
Transmembrane Helix	25	49	0.87
Non-Cytoplasmic	50	58	0.44
Transmembrane Helix	59	81	0.87
Cytoplasmic	82	135	0.58
Transmembrane Helix	136	158	0.91
Non-Cytoplasmic	159	191	0.92
Transmembrane Helix	192	213	0.93
Cytoplasmic	214	248	0.95
Transmembrane Helix	249	270	0.90
Non-Cytoplasmic	271	287	0.84
Transmembrane Helix	288	308	0.91
Cytoplasmic	309	332	0.97