YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYT8_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQADRSMKMG HVSNPLSTSA PVDATAGPNL IPDLITKIPW PRWILFIAIL AAGVLLVSCL  60
   61 LCVICYCCHR QRHRKQPKDK ETVGLGSARN STTTHLVQPD VECLEPCSGG DQPWGQLLLS 120
  121 LEYDFGSQEI RVGLRQAKNL KAEGTADPYA RVSVSTQAGR RHETKVHRGT LCPMFEETCC 180
  181 FLVPPAELPK ATLKVQLLDF KRFSEHEPLG ELQLPLGTVD LQHVLESWYQ LGPPGSTESE 240
  241 QMGELCFSLR YVPSSGRLTV VILEARGLNP GLAEAYVKVQ LILNQRKWKK NKTSSKKGTT 300
  301 NPYFNEAFVF LVPVSQLQSM DLVLAVWARG LQLLAEPVGK VLLGPRASGQ PLQHWADMLA 360
  361 HARRPIAQWH HLRSPREVDR ALALQPRLPL LRPRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.48
Transmembrane Helix	44	68	0.92
Cytoplasmic	69	395	0.69