YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYP42_ARATH
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP  60
   61 GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA HSKALMPTFG DNKGIHREVE 120
  121 MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR 180
  181 LQQQKEGQDE VDLEFNVNGK MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV 240
  241 LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK 300
  301 CATILLVLCL IMIVLLILKN ILF

Type	Start	End	Confidence
Cytoplasmic	1	295	0.67
Transmembrane Helix	296	318	0.90
Non-Cytoplasmic	319	323	0.52